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Search and Browse
How can I search Ensembl Genomes?
What type of data is available under the 'Location' tab of Ensembl Genomes and how can I change it?
Is there a table with gene counts and other summary statistics for my species?
I used the 'Configure this page' button to make some changes. How do I save my selections?
How can I add a data track to Ensembl, or change a view?
What styles are available for the data tracks in views like Region in detail in the Location tab?
How can I adjust the width of images in Ensembl Genomes to fit the size of the screen?
How do I install the API?
What sequence search tools exist in Ensembl Genomes?
Why do I see different hits when I use BLAST from Ensembl, UCSC, and NCBI
What is the Variant Effect Predictor (VEP)?
I have a list of genomic coordinates from the previous assembly of maize, AGPv2. How can I get the coordinates in the current assembly, AGPv3?
Download Export and Upload
Can I install a local copy of the Ensembl Genomes database(s)?
Is there a list of all species and corresponding metadata available in Ensembl Genomes?
How can I retrieve nucleotide sequences in FASTA format and find out their chromosomal locations?
Can I download complete proteomes in Ensembl Genomes?
How can I export the sequences depicted in the genome browser?
How can I export the images used in Ensembl Genomes?
How can I view my data in Ensembl Genomes?
I've created a customised view in Ensembl Genomes. Can I share this with my colleagues and collaborators by email?
Can modENCODE data be added for Drosophila species?
Genes and Transcripts
What is the meaning of the red, black, and peach colours in the gene sequence?
How are names assigned to genes in Ensembl Genomes?
Can I view exons, introns, and flanking sequence in one transcript?
How does Ensembl determine homology relationships?
How do I get alignments of homologous proteins? Can I get the CDS (coding sequence) alignments as well?
What do Target % ID and Query % ID mean in the Comparative Genomics views of the Ensembl Genome browsers?
What is the difference between Compara and Pan taxonomic-Compara in Ensembl Genomes?
How do I see multi-species comparisons?
How can I view syntenic regions in Ensembl Genomes?
How can I view the variation data from the 1001 Arabidopsis Genomes project in Ensembl Genomes browser?
How can I download sequences and their correspondent genomic coordinates using BioMart?
What is the difference between % Identity and "[Species Name] % Identity" homologs attributes in BioMart?
What is an Ensembl release?
How can I get access to the Ensembl Genomes archive?
What is a genome assembly?
When are newly sequenced genomes available in Ensembl Genomes?
Do you have viral genomes in Ensembl Genomes?
Does Ensembl Genomes provide the karyotypes and cytogenetic banding patterns for its annotated genomes?
How do I cite Ensembl Genomes?