Ensembl Genomes Release 35 Intentions

  • Release scheduled for 21st March 2017
  • Update to Ensembl 88 software
  • Removal of MySQL databases from release 26 from the public MySQL server

Metazoa

  • New genomes
    • Adineta vaga (bdelloid rotifer)
    • Anoplophora glabripennis (Asian long-horned beetle)
    • Mayetiola destructor (Hessian fly)
  • Updated genomes
    • Amphimedon queenslandica (sponge): gene set v2.1
    • Tribolium castaneum (red flour beetle): assembly and gene set v5.2
  • Updated data‚Äč
    • Updated peptide comparative genomics
    • Updated protein features
    • Updated BioMarts

Fungi

  • New genomes
    • New genomes from INSDC
    • New genome from Puccinia striiformis f. sp. tritici PST-130 imported from JGI
  • Updated genomes
    • Updated genomes from INSDC
    • Updated Botrytis cinerea genome with community based annotations from WebApollo
  • Updated data
    • Updated PHI-base annotation
    • Updated protein features
    • Updated peptide comparative genomics
    • Updated BioMarts

Protists

  • New genomes imported from INSDC
    • Cyclospora cayetanensis
    • Plasmodium coatneyi
    • Plasmodium malariae
    • Plasmodium ovale wallikeri
    • Trypanosoma cruzi
  • Updated genomes
    • Plasmodium falciparum
  • New data
    • Phaeodactylum tricornutum variation
  • Updated data
    • Updated variation data
      • Phytophthora infestans
      • Plasmodium falciparum
    • Updated PHI-base annotation
    • Updated protein features
    • Updated peptide comparative genomics
    • Updated BioMarts

Plants

  • Updated genomes
    • New genome and genebuild for Hordeum vulgare (barley)
    • New genome and genebuild for Sorghum bicolor
  • New data
    • New variation data for Triticum aestivum (wheat)
    • New variation data for Oryza sativa (rice)
  • Updated data
    • Updated genebuild for Zea mays (corn)
    • Updated peptide comparative genomics including updated barley, sorghum, corn and wheat
    • Updated protein features
    • Updated BioMarts

Bacteria

  • New genomes
    • New, non-redundant genomes from INSDC
  • Updated genomes
    • Updated genomes from INSDC
  • Updated data
    • Updated gene families
    • Updated data from PHI-base